operations.peakFinder

Class FindPeaksGui

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Dialog

javax.swing.JDialog

operations.peakFinder.FindPeaksGui

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

public class FindPeaksGui
extends javax.swing.JDialog
implements java.awt.event.ActionListener

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class java.awt.Dialog

java.awt.Dialog.ModalExclusionType, java.awt.Dialog.ModalityType

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.BaselineResizeBehavior

Field Summary

Fields

Modifier and Type	Field and Description
java.lang.String	innerRadius
java.lang.String	minDistance
java.lang.String	outerRadius
java.lang.String	selectionRadius
java.lang.String	SNRThreshold
java.lang.String	threshold
boolean	useCells
boolean	useDiscoidal

Fields inherited from class java.awt.Dialog

DEFAULT_MODALITY_TYPE

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, EXIT_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
FindPeaksGui(Node node)

Method Summary

Modifier and Type	Method and Description
void	actionPerformed(java.awt.event.ActionEvent e)
java.lang.String	getDISTANCE_BETWEEN_PEAKS()
java.lang.String	getImagePath()
java.lang.String	getImageType()
java.lang.String	getINNER_RADIUS()
double	getInnerRadius()
java.lang.String	getINTENSITY_THRESHOLD()
java.lang.String	getMethod()
double	getMinDistance()
java.lang.String	getOUTER_RADIUS()
double	getOuterRadius()
java.lang.String	getSelectedChannel()
java.lang.String	getSELECTION_RADIUS()
double	getSelectionRadius()
java.lang.String	getSNR_THRESHOLD()
double	getSNRThreshold()
double	getThreshold()
boolean	isCanceled()
static void	main(java.lang.String[] args)
boolean	performDiscoidalFiltering()
boolean	performInsideCells()

Methods inherited from class javax.swing.JDialog

getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setTransferHandler, update

Methods inherited from class java.awt.Dialog

addNotify, getModalityType, getTitle, hide, isModal, isResizable, isUndecorated, setBackground, setModal, setModalityType, setOpacity, setResizable, setShape, setTitle, setUndecorated, setVisible, show, toBack

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, removeNotify, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImage, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, dispatchEvent, enable, enable, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

innerRadius

public java.lang.String innerRadius

outerRadius

public java.lang.String outerRadius

SNRThreshold

public java.lang.String SNRThreshold

threshold

public java.lang.String threshold

minDistance

public java.lang.String minDistance

selectionRadius

public java.lang.String selectionRadius

useDiscoidal

public boolean useDiscoidal

useCells

public boolean useCells

Constructor Detail

FindPeaksGui

public FindPeaksGui(Node node)

Method Detail

getInnerRadius

public double getInnerRadius()

getOuterRadius

public double getOuterRadius()

main

public static void main(java.lang.String[] args)

isCanceled

public boolean isCanceled()

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

Specified by:

actionPerformed in interface java.awt.event.ActionListener

getImageType

public java.lang.String getImageType()

getSelectedChannel

public java.lang.String getSelectedChannel()

getMethod

public java.lang.String getMethod()

getImagePath

public java.lang.String getImagePath()

getThreshold

public double getThreshold()

getSNRThreshold

public double getSNRThreshold()

getMinDistance

public double getMinDistance()

getSelectionRadius

public double getSelectionRadius()

performInsideCells

public boolean performInsideCells()

performDiscoidalFiltering

public boolean performDiscoidalFiltering()

getINTENSITY_THRESHOLD

public java.lang.String getINTENSITY_THRESHOLD()

getSNR_THRESHOLD

public java.lang.String getSNR_THRESHOLD()

getDISTANCE_BETWEEN_PEAKS

public java.lang.String getDISTANCE_BETWEEN_PEAKS()

getSELECTION_RADIUS

public java.lang.String getSELECTION_RADIUS()

getINNER_RADIUS

public java.lang.String getINNER_RADIUS()

getOUTER_RADIUS

public java.lang.String getOUTER_RADIUS()