Serialized Form

Package analysis
- Class analysis.Plot extends javax.swing.JComponent implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - transform
```
java.awt.geom.AffineTransform transform
```
      The transform.
    - plotTypes
```
java.util.ArrayList<E> plotTypes
```
      The plot types.
    - plotColors
```
java.util.ArrayList<E> plotColors
```
      The plot colors.
    - plotLineWidths
```
java.util.ArrayList<E> plotLineWidths
```
      The plot line widths.
    - font
```
java.awt.Font font
```
      The font.
    - xAxisLabel
```
java.lang.String xAxisLabel
```
      The x axis label.
    - yAxisLabel
```
java.lang.String yAxisLabel
```
      The y axis label.
    - caption
```
java.lang.String caption
```
      The caption.
    - leftMargin
```
int leftMargin
```
      The left margin.
    - bottomMargin
```
int bottomMargin
```
      The bottom margin.
    - plotCoordinates
```
java.util.ArrayList<E> plotCoordinates
```
      The plot coordinates.
    - pixelCoordinates
```
java.util.ArrayList<E> pixelCoordinates
```
      The pixel coordinates.
    - originalBounds
```
java.awt.geom.Rectangle2D.Double originalBounds
```
      The original bounds.
    - bounds
```
java.awt.geom.Rectangle2D.Double bounds
```
      The bounds.
    - mousePosition
```
java.awt.Point mousePosition
```
      The mouse position.
    - menu
```
javax.swing.JPopupMenu menu
```
      The menu.
    - zoomInMenuItem
```
javax.swing.JRadioButtonMenuItem zoomInMenuItem
```
      The zoom in menu item.
    - zoomOutMenuItem
```
javax.swing.JRadioButtonMenuItem zoomOutMenuItem
```
      The zoom out menu item.
    - saveMenuItem
```
javax.swing.JMenuItem saveMenuItem
```
      The save menu item.
    - copyMenuItem
```
javax.swing.JMenuItem copyMenuItem
```
      The copy menu item.
    - adjustAxisMenuItem
```
javax.swing.JMenuItem adjustAxisMenuItem
```
      The adjust axis menu item.
    - selectRegionMenuItem
```
javax.swing.JMenuItem selectRegionMenuItem
```
      The select region menu item.
    - zoomFactor
```
double zoomFactor
```
      The zoom factor.
    - currentDirectory
```
java.io.File currentDirectory
```
      The current directory.
    - isRegionSelection
```
boolean isRegionSelection
```
      The is region selection.
    - regionSelection
```
java.awt.Rectangle regionSelection
```
      The region selection.
Package data.stepFitter
- Class data.stepFitter.Plot extends java.awt.Component implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - zoomFactor
```
double zoomFactor
```
      The zoom factor.
    - leftMargin
```
int leftMargin
```
      The left margin.
    - bottomMargin
```
int bottomMargin
```
      The bottom margin.
    - xSelected
```
double xSelected
```
      The x selected.
    - ySelected
```
double ySelected
```
      The y selected.
    - xValues
```
java.util.ArrayList<E> xValues
```
      The x values.
    - yValues
```
java.util.ArrayList<E> yValues
```
      The y values.
    - colors
```
java.util.ArrayList<E> colors
```
      The colors.
    - types
```
java.util.ArrayList<E> types
```
      The types.
    - thickness
```
java.util.ArrayList<E> thickness
```
      The thickness.
    - plotBounds
```
java.awt.geom.Rectangle2D.Double plotBounds
```
      The plot bounds.
    - visibleBounds
```
java.awt.geom.Rectangle2D.Double visibleBounds
```
      The visible bounds.
    - targetedVisibleBounds
```
java.awt.geom.Rectangle2D.Double targetedVisibleBounds
```
      The targeted visible bounds.
    - markValues
```
java.util.ArrayList<E> markValues
```
      The mark values.
    - markColors
```
java.util.ArrayList<E> markColors
```
      The mark colors.
    - lock
```
java.lang.Object lock
```
      The lock.
Package gui
- Class gui.AboutPanel extends javax.swing.JFrame implements Serializable
  
  serialVersionUID:
  
  1L
- Class gui.ChannelsDialog extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - folder
```
java.io.File folder
```
    - acquisitionTextField
```
javax.swing.JTextField acquisitionTextField
```
    - brightFieldTextField
```
javax.swing.JTextField brightFieldTextField
```
    - greenTextField
```
javax.swing.JTextField greenTextField
```
    - redTextField
```
javax.swing.JTextField redTextField
```
    - blueTextField
```
javax.swing.JTextField blueTextField
```
    - foundFilesTextArea
```
javax.swing.JTextArea foundFilesTextArea
```
    - searchButton
```
javax.swing.JButton searchButton
```
    - okButton
```
javax.swing.JButton okButton
```
    - cancelButton
```
javax.swing.JButton cancelButton
```
    - canceled
```
boolean canceled
```
- Class gui.CodeTextPane extends javax.swing.JComponent implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - textPane
```
javax.swing.JTextPane textPane
```
      The text pane.
    - document
```
javax.swing.text.StyledDocument document
```
      The document.
- Class gui.DatabaseDialog extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - database
```
Database database
```
    - pathTextField
```
javax.swing.JTextField pathTextField
```
    - chooseButton
```
javax.swing.JButton chooseButton
```
    - okButton
```
javax.swing.JButton okButton
```
    - cancelButton
```
javax.swing.JButton cancelButton
```
    - canceled
```
boolean canceled
```
- Class gui.DatabaseTreeCellRenderer extends javax.swing.tree.DefaultTreeCellRenderer implements Serializable
  
  serialVersionUID:
  
  1L
- Class gui.ExperimentDialog extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - experiment
```
Experiment experiment
```
      The experiment.
    - okButton
```
javax.swing.JButton okButton
```
      The ok button.
    - cancelButton
```
javax.swing.JButton cancelButton
```
      The cancel button.
    - nameTextField
```
javax.swing.JTextField nameTextField
```
      The name text field.
    - folderTextField
```
javax.swing.JTextField folderTextField
```
      The folder text field.
    - chooseButton
```
javax.swing.JButton chooseButton
```
      The choose button.
    - typeComboBox
```
javax.swing.JComboBox<E> typeComboBox
```
      The type combo box.
    - canceled
```
boolean canceled
```
      The canceled.
- Class gui.FieldOfViewDialog extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - fieldOfView
```
FieldOfView fieldOfView
```
      The field of view.
    - okButton
```
javax.swing.JButton okButton
```
      The ok button.
    - cancelButton
```
javax.swing.JButton cancelButton
```
      The cancel button.
    - nameTextField
```
javax.swing.JTextField nameTextField
```
      The name text field.
    - folderTextField
```
javax.swing.JTextField folderTextField
```
      The folder text field.
    - chooseButton
```
javax.swing.JButton chooseButton
```
      The choose button.
    - canceled
```
boolean canceled
```
      The canceled.
- Class gui.FileDialog extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - fileNode
```
FileNode fileNode
```
      The file node.
    - okButton
```
javax.swing.JButton okButton
```
      The ok button.
    - cancelButton
```
javax.swing.JButton cancelButton
```
      The cancel button.
    - pathTextField
```
javax.swing.JTextField pathTextField
```
      The path text field.
    - chooseButton
```
javax.swing.JButton chooseButton
```
      The choose button.
    - typeComboBox
```
javax.swing.JComboBox<E> typeComboBox
```
      The type combo box.
    - canceled
```
boolean canceled
```
      The canceled.
- Class gui.FileSelectionDialog extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - numberFormat
```
java.text.NumberFormat numberFormat
```
    - decimalFormat
```
java.text.DecimalFormat decimalFormat
```
    - imageType
```
java.lang.String imageType
```
    - chckbxInsideCells
```
javax.swing.JCheckBox chckbxInsideCells
```
    - customSearch
```
java.lang.String customSearch
```
    - btnCancel
```
javax.swing.JButton btnCancel
```
    - btnProcess
```
javax.swing.JButton btnProcess
```
    - fileTypeComboBox
```
javax.swing.JComboBox<E> fileTypeComboBox
```
    - channelComboBox
```
javax.swing.JComboBox<E> channelComboBox
```
    - filenodes
```
java.util.ArrayList<E> filenodes
```
    - types
```
java.lang.String[] types
```
    - canceled
```
boolean canceled
```
    - node
```
Node node
```
    - channel
```
java.lang.String channel
```
    - method
```
java.lang.String method
```
    - useDiscoidal
```
boolean useDiscoidal
```
    - useCells
```
boolean useCells
```
    - zScale
```
java.lang.String zScale
```
    - customSearchTxtField
```
javax.swing.JTextField customSearchTxtField
```
- Class gui.LogPanel extends javax.swing.JPanel implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - listModel
```
javax.swing.DefaultListModel<E> listModel
```
    - list
```
javax.swing.JList<E> list
```
    - clearButton
```
javax.swing.JButton clearButton
```
    - saveButton
```
javax.swing.JButton saveButton
```
- Class gui.MacroDialog extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - channels
```
java.lang.String[] channels
```
      The channels.
    - macroFileTextField
```
javax.swing.JTextField macroFileTextField
```
      The macro file text field.
    - chooseButton
```
javax.swing.JButton chooseButton
```
      The choose button.
    - okButton
```
javax.swing.JButton okButton
```
      The ok button.
    - cancelButton
```
javax.swing.JButton cancelButton
```
      The cancel button.
    - channelComboBox
```
javax.swing.JComboBox<E> channelComboBox
```
      The channel combo box.
    - canceled
```
boolean canceled
```
      The canceled.
- Class gui.OperationButton extends javax.swing.JButton implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - model
```
DatabaseModel model
```
      The model.
    - operation
```
Operation operation
```
      The operation.
    - contextElement
```
ContextElement contextElement
```
      The context element.
- Class gui.RunMacroDialog extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - channels
```
java.lang.String[] channels
```
      The channels.
    - levels
```
java.lang.String[] levels
```
      The levels.
    - macroFilenameTextField
```
javax.swing.JTextField macroFilenameTextField
```
      The macro filename text field.
    - chooseButton
```
javax.swing.JButton chooseButton
```
      The choose button.
    - macroTextPane
```
CodeTextPane macroTextPane
```
      The macro text pane.
    - channelComboBox
```
javax.swing.JComboBox<E> channelComboBox
```
      The channel combo box.
    - runForEachComboBox
```
javax.swing.JComboBox<E> runForEachComboBox
```
      The run for each combo box.
    - filenameContainsTextField
```
javax.swing.JTextField filenameContainsTextField
```
      The filename contains text field.
    - saveButton
```
javax.swing.JButton saveButton
```
      The save button.
    - runButton
```
javax.swing.JButton runButton
```
      The run button.
    - stopButton
```
javax.swing.JButton stopButton
```
      The stop button.
    - selectedFile
```
java.io.File selectedFile
```
      The selected file.
    - node
```
Node node
```
      The node.
    - model
```
DatabaseModel model
```
      The model.
    - isRunning
```
boolean isRunning
```
      The is running.
- Class gui.SampleDialog extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - sample
```
Sample sample
```
      The sample.
    - okButton
```
javax.swing.JButton okButton
```
      The ok button.
    - cancelButton
```
javax.swing.JButton cancelButton
```
      The cancel button.
    - nameTextField
```
javax.swing.JTextField nameTextField
```
      The name text field.
    - folderTextField
```
javax.swing.JTextField folderTextField
```
      The folder text field.
    - chooseButton
```
javax.swing.JButton chooseButton
```
      The choose button.
    - canceled
```
boolean canceled
```
      The canceled.

Package macros

Class macros.MacroDialog2 extends javax.swing.JDialog implements Serializable

serialVersionUID:: 1L

Serialized Fields

node
```
Node node
```
importer
```
Importer importer
```
filter
```
NodeFilterInterface filter
```

channelComboBox

javax.swing.JComboBox<E> channelComboBox

tagComboBox
```
javax.swing.JComboBox<E> tagComboBox
```

customTagTextField

javax.swing.JTextField customTagTextField

extensionComboBox

javax.swing.JComboBox<E> extensionComboBox

macroTextPane
```
javax.swing.JTextArea macroTextPane
```

macroPathTextField

javax.swing.JTextField macroPathTextField

chooseButton
```
javax.swing.JButton chooseButton
```
runButton
```
javax.swing.JButton runButton
```
stopButton
```
javax.swing.JButton stopButton
```

addToDatabaseCheckBox

javax.swing.JCheckBox addToDatabaseCheckBox

tagTextField
```
javax.swing.JTextField tagTextField
```

overrideTagCheckBox

javax.swing.JCheckBox overrideTagCheckBox

thread
```
java.lang.Thread thread
```
shouldRun
```
boolean shouldRun
```

Package operations.cellularConcentration
- Class operations.cellularConcentration.CellularConcentrationGUI extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - btnCancel
```
javax.swing.JButton btnCancel
```
      The btn cancel.
    - btnProcess
```
javax.swing.JButton btnProcess
```
      The btn process.
    - fileTypeComboBox
```
javax.swing.JComboBox<E> fileTypeComboBox
```
      The file type combo box.
    - channelComboBox
```
javax.swing.JComboBox<E> channelComboBox
```
      The channel combo box.
    - methodComboBox
```
javax.swing.JComboBox<E> methodComboBox
```
      The method combo box.
    - channels
```
java.lang.String[] channels
```
      The channels.
    - types
```
java.lang.String[] types
```
      The types.
    - pathToImage
```
javax.swing.JTextField pathToImage
```
      The path to image.
    - canceled
```
boolean canceled
```
      The canceled.
    - node
```
Node node
```
      The node.
    - channel
```
java.lang.String channel
```
      The image path.
    - method
```
java.lang.String method
```
      The image path.
    - imagePath
```
java.lang.String imagePath
```
      The image path.
    - imageType
```
java.lang.String imageType
```
      The image type.
Package operations.changePoint
- Class operations.changePoint.ChangePointGUI extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - btnCancel
```
javax.swing.JButton btnCancel
```
      The btn cancel.
    - btnProcess
```
javax.swing.JButton btnProcess
```
      The btn process.
    - fileTypeComboBox
```
javax.swing.JComboBox<E> fileTypeComboBox
```
      The file type combo box.
    - channelComboBox
```
javax.swing.JComboBox<E> channelComboBox
```
      The channel combo box.
    - methodComboBox
```
javax.swing.JComboBox<E> methodComboBox
```
      The method combo box.
    - channels
```
java.lang.String[] channels
```
      The channels.
    - types
```
java.lang.String[] types
```
      The types.
    - pathToImage
```
javax.swing.JTextField pathToImage
```
      The path to image.
    - canceled
```
boolean canceled
```
      The canceled.
    - node
```
Node node
```
      The node.
    - channel
```
java.lang.String channel
```
      The image path.
    - method
```
java.lang.String method
```
      The image path.
    - imagePath
```
java.lang.String imagePath
```
      The image path.
    - imageType
```
java.lang.String imageType
```
      The image type.
Package operations.correlation
- Class operations.correlation.CorrelationOperationGui extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - channels
```
java.lang.String[] channels
```
      The channels.
    - types
```
java.lang.String[] types
```
      The types.
    - canceled
```
boolean canceled
```
      The canceled.
    - node
```
Node node
```
      The node.
    - filter1Text
```
java.lang.String filter1Text
```
      The filter1 text.
    - filter2Text
```
java.lang.String filter2Text
```
      The filter2 text.
    - panel
```
javax.swing.JPanel panel
```
      The panel.
    - panel_1
```
javax.swing.JPanel panel_1
```
      The panel_1.
    - panel_2
```
javax.swing.JPanel panel_2
```
      The panel_2.
    - panel_3
```
javax.swing.JPanel panel_3
```
      The panel_3.
    - panel_4
```
javax.swing.JPanel panel_4
```
      The panel_4.
    - panel_5
```
javax.swing.JPanel panel_5
```
      The panel_5.
    - channel1_TypComboBox
```
javax.swing.JComboBox<E> channel1_TypComboBox
```
      The channel1_ typ combo box.
    - ch2TypeComboBox
```
javax.swing.JComboBox<E> ch2TypeComboBox
```
      The ch2 type combo box.
    - channel1ComboBox
```
javax.swing.JComboBox<E> channel1ComboBox
```
      The channel1 combo box.
    - channel2ComboBox
```
javax.swing.JComboBox<E> channel2ComboBox
```
      The channel2 combo box.
    - filterCh1TextField
```
javax.swing.JTextField filterCh1TextField
```
      The filter ch1 text field.
    - filterCh2TextField
```
javax.swing.JTextField filterCh2TextField
```
      The filter ch2 text field.
    - lblCustom
```
javax.swing.JLabel lblCustom
```
      The lbl custom.
    - lblCustom_1
```
javax.swing.JLabel lblCustom_1
```
      The lbl custom_1.
    - btnProcess
```
javax.swing.JButton btnProcess
```
      The btn process.
    - btnCancel
```
javax.swing.JButton btnCancel
```
      The btn cancel.
    - type2
```
java.lang.String type2
```
      The type2.
    - type1
```
java.lang.String type1
```
      The type1.
    - channel1
```
java.lang.String channel1
```
      The channel1.
    - channel2
```
java.lang.String channel2
```
      The channel2.
    - filter1
```
java.lang.String filter1
```
      The filter1.
    - filter2
```
java.lang.String filter2
```
      The filter2.
    - xProjection
```
javax.swing.JCheckBox xProjection
```
      The x projection.
    - yProjection
```
javax.swing.JCheckBox yProjection
```
      The y projection.
    - project_on_X
```
boolean project_on_X
```
      The project_on_ x.
    - project_on_Y
```
boolean project_on_Y
```
      The project_on_ y.
Package operations.diffusion
- Class operations.diffusion.DiffusionOperationGUI extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - btnCancel
```
javax.swing.JButton btnCancel
```
      The btn cancel.
    - btnProcess
```
javax.swing.JButton btnProcess
```
      The btn process.
    - fileTypeComboBox
```
javax.swing.JComboBox<E> fileTypeComboBox
```
      The file type combo box.
    - channelComboBox
```
javax.swing.JComboBox<E> channelComboBox
```
      The channel combo box.
    - methodComboBox
```
javax.swing.JComboBox<E> methodComboBox
```
      The method combo box.
    - channels
```
java.lang.String[] channels
```
      The channels.
    - types
```
java.lang.String[] types
```
      The types.
    - customSearchTxtField
```
javax.swing.JTextField customSearchTxtField
```
      The custom search txt field.
    - canceled
```
boolean canceled
```
      The canceled.
    - node
```
Node node
```
      The node.
    - channel
```
java.lang.String channel
```
      The image path.
    - method
```
java.lang.String method
```
      The image path.
    - imagePath
```
java.lang.String imagePath
```
      The image path.
    - maxSteps
```
java.lang.String maxSteps
```
      The max steps.
    - timeInterval
```
java.lang.String timeInterval
```
      The time interval.
    - pixelSize
```
java.lang.String pixelSize
```
      The pixel size.
    - numberOfPoints
```
java.lang.String numberOfPoints
```
      The number of points.
    - fitUntil
```
java.lang.String fitUntil
```
      The fit until.
    - imageType
```
java.lang.String imageType
```
      The image type.
    - customSearch
```
java.lang.String customSearch
```
      The custom search.
    - lblLookAhead
```
javax.swing.JLabel lblLookAhead
```
      The lbl look ahead.
    - timeIntervaltextField
```
javax.swing.JTextField timeIntervaltextField
```
      The time intervaltext field.
    - lblSlices
```
javax.swing.JLabel lblSlices
```
      The lbl slices.
    - lblMaxStepSize
```
javax.swing.JLabel lblMaxStepSize
```
      The lbl max step size.
    - PixelSizeTextField
```
javax.swing.JTextField PixelSizeTextField
```
      The Pixel size text field.
    - lblPixels
```
javax.swing.JLabel lblPixels
```
      The lbl pixels.
    - lblMinimumNumberOf
```
javax.swing.JLabel lblMinimumNumberOf
```
      The lbl minimum number of.
    - NumberOfPointstextField
```
javax.swing.JTextField NumberOfPointstextField
```
      The Number of pointstext field.
    - FItLimittextField_1
```
javax.swing.JTextField FItLimittextField_1
```
      The F it limittext field_1.
    - lblFitUntilall
```
javax.swing.JLabel lblFitUntilall
```
      The lbl fit untilall.
    - lblS
```
javax.swing.JLabel lblS
```
      The lbl s.
    - lblDiffusionDimensionality
```
javax.swing.JLabel lblDiffusionDimensionality
```
      The lbl diffusion dimensionality.
    - dimensionComboBox
```
javax.swing.JComboBox<E> dimensionComboBox
```
      The dimension combo box.
    - chckbxAverageAllTrajectories
```
javax.swing.JCheckBox chckbxAverageAllTrajectories
```
      The chckbx average all trajectories.
    - doAverage
```
boolean doAverage
```
      The do average.

Package operations.flatImages

Class operations.flatImages.SetBackgroundGui extends javax.swing.JDialog implements Serializable

serialVersionUID:: 1L

Serialized Fields

btnCancel
```
javax.swing.JButton btnCancel
```
btnProcess
```
javax.swing.JButton btnProcess
```

fileTypeComboBox

javax.swing.JComboBox<E> fileTypeComboBox

channelComboBox

javax.swing.JComboBox<E> channelComboBox

methodComboBox
```
javax.swing.JComboBox<E> methodComboBox
```
types
```
java.lang.String[] types
```
pathToImage
```
javax.swing.JTextField pathToImage
```
canceled
```
boolean canceled
```
node
```
Node node
```
channel
```
java.lang.String channel
```
method
```
java.lang.String method
```
imagePath
```
java.lang.String imagePath
```
imageType
```
java.lang.String imageType
```
btnLoadImage
```
javax.swing.JButton btnLoadImage
```

Package operations.focusLifetime
- Class operations.focusLifetime.FocusLifetimeGUI extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - btnCancel
```
javax.swing.JButton btnCancel
```
      The btn cancel.
    - btnProcess
```
javax.swing.JButton btnProcess
```
      The btn process.
    - fileTypeComboBox
```
javax.swing.JComboBox<E> fileTypeComboBox
```
      The file type combo box.
    - channelComboBox
```
javax.swing.JComboBox<E> channelComboBox
```
      The channel combo box.
    - methodComboBox
```
javax.swing.JComboBox<E> methodComboBox
```
      The method combo box.
    - channels
```
java.lang.String[] channels
```
      The channels.
    - types
```
java.lang.String[] types
```
      The types.
    - customSearchTxtField
```
javax.swing.JTextField customSearchTxtField
```
      The custom search txt field.
    - canceled
```
boolean canceled
```
      The canceled.
    - node
```
Node node
```
      The node.
    - channel
```
java.lang.String channel
```
      The image path.
    - method
```
java.lang.String method
```
      The image path.
    - imagePath
```
java.lang.String imagePath
```
      The image path.
    - imageType
```
java.lang.String imageType
```
      The image type.
    - customSearch
```
java.lang.String customSearch
```
      The custom search.
Package operations.locationMaps
- Class operations.locationMaps.LocationMapsGui extends javax.swing.JDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - btnCancel
```
javax.swing.JButton btnCancel
```
      The btn cancel.
    - btnProcess
```
javax.swing.JButton btnProcess
```
      The btn process.
    - channels
```
java.lang.String[] channels
```
      The channels.
    - types
```
java.lang.String[] types
```
      The types.
    - canceled
```
boolean canceled
```
      The canceled.
    - node
```
Node node
```
      The node.
    - channel
```
java.lang.String channel
```
      The image path.
    - method
```
java.lang.String method
```
      The image path.
    - imagePath
```
java.lang.String imagePath
```
      The image path.
    - matFilePath
```
java.lang.String matFilePath
```
      The mat file path.
    - customFiter
```
java.lang.String customFiter
```
      The custom fiter.
    - imageType
```
java.lang.String imageType
```
      The image type.
    - panel
```
javax.swing.JPanel panel
```
      The panel.
    - panel_1
```
javax.swing.JPanel panel_1
```
      The panel_1.
    - ImportPanel
```
javax.swing.JPanel ImportPanel
```
      The Import panel.
    - CreateInputPanel
```
javax.swing.JPanel CreateInputPanel
```
      The Create input panel.
    - fileTypeComboBox
```
javax.swing.JComboBox<E> fileTypeComboBox
```
      The file type combo box.
    - channelComboBox
```
javax.swing.JComboBox<E> channelComboBox
```
      The channel combo box.
    - lblCustomfilter
```
javax.swing.JLabel lblCustomfilter
```
      The lbl customfilter.
    - customFilterTextField
```
javax.swing.JTextField customFilterTextField
```
      The custom filter text field.
    - btnLoadmat
```
javax.swing.JButton btnLoadmat
```
      The btn loadmat.
    - mathPathTextField
```
javax.swing.JTextField mathPathTextField
```
      The math path text field.

Package operations.macro

Class operations.macro.MacroOperationGUI extends javax.swing.JDialog implements Serializable

serialVersionUID:: 1L

Serialized Fields

channels
```
java.lang.String[] channels
```
comboBox
```
javax.swing.JComboBox<E> comboBox
```
CustomFilter
```
javax.swing.JTextField CustomFilter
```
macroComboBox
```
javax.swing.JComboBox<E> macroComboBox
```
MacroTextArea
```
javax.swing.JTextArea MacroTextArea
```
canceled
```
boolean canceled
```
macro
```
java.lang.String macro
```
outputTag
```
javax.swing.JTextField outputTag
```
outputImage
```
ij.ImagePlus outputImage
```
frame
```
javax.swing.JFrame frame
```
node
```
Node node
```
Selectedchannel
```
java.lang.String Selectedchannel
```
imageFileNodeFilter
```
NodeFilterInterface imageFileNodeFilter
```
The image file node filter.

Package operations.microbeTrackerIO

Class operations.microbeTrackerIO.MicrobeTrackerIOGui extends javax.swing.JDialog implements Serializable

serialVersionUID:: 1L

Serialized Fields

btnCancel
```
javax.swing.JButton btnCancel
```
btnProcess
```
javax.swing.JButton btnProcess
```
types
```
java.lang.String[] types
```
canceled
```
boolean canceled
```
node
```
Node node
```
channel
```
java.lang.String channel
```
method
```
java.lang.String method
```
imagePath
```
java.lang.String imagePath
```
matFilePath
```
java.lang.String matFilePath
```
BFFIleInputPath
```
java.lang.String BFFIleInputPath
```
customFiter
```
java.lang.String customFiter
```
imageType
```
java.lang.String imageType
```
tabbedPane
```
javax.swing.JTabbedPane tabbedPane
```
createPanel
```
javax.swing.JPanel createPanel
```
panel_2
```
javax.swing.JPanel panel_2
```

channelComboBox

javax.swing.JComboBox<E> channelComboBox

fileTypeComboBox

javax.swing.JComboBox<E> fileTypeComboBox

label
```
javax.swing.JLabel label
```

customFilterTextField

javax.swing.JTextField customFilterTextField

loadPanel
```
javax.swing.JPanel loadPanel
```
panel_3
```
javax.swing.JPanel panel_3
```
btnLoadmat
```
javax.swing.JButton btnLoadmat
```

mathPathTextField

javax.swing.JTextField mathPathTextField

btnBfInput
```
javax.swing.JButton btnBfInput
```
BFInput
```
javax.swing.JTextField BFInput
```

Package operations.peakFinder

Class operations.peakFinder.FindPeaksGui extends javax.swing.JDialog implements Serializable

serialVersionUID:: 1L

Serialized Fields

numberFormat
```
java.text.NumberFormat numberFormat
```
decimalFormat
```
java.text.DecimalFormat decimalFormat
```
panel
```
javax.swing.JPanel panel
```

useDiscoidalFilterChk

javax.swing.JCheckBox useDiscoidalFilterChk

innerRadiusTxt
```
javax.swing.JTextField innerRadiusTxt
```
outerRadiusTxt
```
javax.swing.JTextField outerRadiusTxt
```
lblRadius
```
javax.swing.JLabel lblRadius
```
lblInner
```
javax.swing.JLabel lblInner
```
lblOuter
```
javax.swing.JLabel lblOuter
```
DiscoidalFilterPanel
```
javax.swing.JPanel DiscoidalFilterPanel
```
PeakFinderParameters
```
javax.swing.JPanel PeakFinderParameters
```
lblThreshold
```
javax.swing.JLabel lblThreshold
```
SNRTxt
```
javax.swing.JTextField SNRTxt
```
lblSnr
```
javax.swing.JLabel lblSnr
```
IntensityTxt
```
javax.swing.JTextField IntensityTxt
```
lblThreshold_1
```
javax.swing.JLabel lblThreshold_1
```
lblIntensity
```
javax.swing.JLabel lblIntensity
```
lblSelectionRadius
```
javax.swing.JLabel lblSelectionRadius
```

SelectionRadiusTxt

javax.swing.JTextField SelectionRadiusTxt

lblMinDistance
```
javax.swing.JLabel lblMinDistance
```
minDistanceTxt
```
javax.swing.JTextField minDistanceTxt
```
lblPx
```
javax.swing.JLabel lblPx
```
lblPx_1
```
javax.swing.JLabel lblPx_1
```
chckbxInsideCells
```
javax.swing.JCheckBox chckbxInsideCells
```
btnCancel
```
javax.swing.JButton btnCancel
```
btnProcess
```
javax.swing.JButton btnProcess
```
innerRadius
```
java.lang.String innerRadius
```
outerRadius
```
java.lang.String outerRadius
```
SNRThreshold
```
java.lang.String SNRThreshold
```
threshold
```
java.lang.String threshold
```
minDistance
```
java.lang.String minDistance
```
selectionRadius
```
java.lang.String selectionRadius
```

fileTypeComboBox

javax.swing.JComboBox<E> fileTypeComboBox

channelComboBox

javax.swing.JComboBox<E> channelComboBox

methodComboBox
```
javax.swing.JComboBox<E> methodComboBox
```
types
```
java.lang.String[] types
```
canceled
```
boolean canceled
```
node
```
Node node
```
channel
```
java.lang.String channel
```
method
```
java.lang.String method
```
imagePath
```
java.lang.String imagePath
```
useDiscoidal
```
boolean useDiscoidal
```
useCells
```
boolean useCells
```
imageType
```
java.lang.String imageType
```
performOperationInsideCells
```
boolean performOperationInsideCells
```
INTENSITY_THRESHOLD
```
java.lang.String INTENSITY_THRESHOLD
```
SNR_THRESHOLD
```
java.lang.String SNR_THRESHOLD
```
DISTANCE_BETWEEN_PEAKS
```
java.lang.String DISTANCE_BETWEEN_PEAKS
```
SELECTION_RADIUS
```
java.lang.String SELECTION_RADIUS
```
INNER_RADIUS
```
java.lang.String INNER_RADIUS
```
OUTER_RADIUS
```
java.lang.String OUTER_RADIUS
```

Package operations.peakFitter

Class operations.peakFitter.CopyOfPeakFitterGui extends javax.swing.JDialog implements Serializable

serialVersionUID:: 1L

Serialized Fields

numberFormat
```
java.text.NumberFormat numberFormat
```
decimalFormat
```
java.text.DecimalFormat decimalFormat
```
imageType
```
java.lang.String imageType
```
panel
```
javax.swing.JPanel panel
```

useDiscoidalFilterChk

javax.swing.JCheckBox useDiscoidalFilterChk

innerRadiusTxt
```
javax.swing.JTextField innerRadiusTxt
```
outerRadiusTxt
```
javax.swing.JTextField outerRadiusTxt
```
lblRadius
```
javax.swing.JLabel lblRadius
```
lblInner
```
javax.swing.JLabel lblInner
```
lblOuter
```
javax.swing.JLabel lblOuter
```
DiscoidalFilterPanel
```
javax.swing.JPanel DiscoidalFilterPanel
```
PeakFinderParameters
```
javax.swing.JPanel PeakFinderParameters
```
lblThreshold
```
javax.swing.JLabel lblThreshold
```
SNRTxt
```
javax.swing.JTextField SNRTxt
```
lblSnr
```
javax.swing.JLabel lblSnr
```
IntensityTxt
```
javax.swing.JTextField IntensityTxt
```
lblThreshold_1
```
javax.swing.JLabel lblThreshold_1
```
lblIntensity
```
javax.swing.JLabel lblIntensity
```
lblSelectionRadius
```
javax.swing.JLabel lblSelectionRadius
```

SelectionRadiusTxt

javax.swing.JTextField SelectionRadiusTxt

lblMinDistance
```
javax.swing.JLabel lblMinDistance
```
minDistanceTxt
```
javax.swing.JTextField minDistanceTxt
```
lblPx
```
javax.swing.JLabel lblPx
```
lblPx_1
```
javax.swing.JLabel lblPx_1
```
chckbxInsideCells
```
javax.swing.JCheckBox chckbxInsideCells
```
customSearch
```
java.lang.String customSearch
```
btnCancel
```
javax.swing.JButton btnCancel
```
btnProcess
```
javax.swing.JButton btnProcess
```
innerRadius
```
java.lang.String innerRadius
```
outerRadius
```
java.lang.String outerRadius
```
SNRThreshold
```
java.lang.String SNRThreshold
```
threshold
```
java.lang.String threshold
```
minDistance
```
java.lang.String minDistance
```
selectionRadius
```
java.lang.String selectionRadius
```

fileTypeComboBox

javax.swing.JComboBox<E> fileTypeComboBox

channelComboBox

javax.swing.JComboBox<E> channelComboBox

types
```
java.lang.String[] types
```
canceled
```
boolean canceled
```
node
```
Node node
```
channel
```
java.lang.String channel
```
method
```
java.lang.String method
```
imagePath
```
java.lang.String imagePath
```
useDiscoidal
```
boolean useDiscoidal
```
useCells
```
boolean useCells
```
PeakFitterPanel
```
javax.swing.JPanel PeakFitterPanel
```

ErrorBaselinetextField

javax.swing.JTextField ErrorBaselinetextField

errorHeightextField

javax.swing.JTextField errorHeightextField

errorXtextField
```
javax.swing.JTextField errorXtextField
```
errorYtextField
```
javax.swing.JTextField errorYtextField
```

errorSigmaXtextField

javax.swing.JTextField errorSigmaXtextField

errorSigmaYtextField

javax.swing.JTextField errorSigmaYtextField

ZscaletxtField
```
javax.swing.JTextField ZscaletxtField
```
lblNewLabel
```
javax.swing.JLabel lblNewLabel
```
lblNewLabel_1
```
javax.swing.JLabel lblNewLabel_1
```
lblNewLabel_2
```
javax.swing.JLabel lblNewLabel_2
```
lblNewLabel_3
```
javax.swing.JLabel lblNewLabel_3
```
lblNewLabel_4
```
javax.swing.JLabel lblNewLabel_4
```
lblNewLabel_5
```
javax.swing.JLabel lblNewLabel_5
```
lblNewLabel_6
```
javax.swing.JLabel lblNewLabel_6
```
zScale
```
java.lang.String zScale
```
errorSigmaY
```
java.lang.String errorSigmaY
```
errorSigmaX
```
java.lang.String errorSigmaX
```
errorY
```
java.lang.String errorY
```
errorX
```
java.lang.String errorX
```
errorHeight
```
java.lang.String errorHeight
```
errorBaseline
```
java.lang.String errorBaseline
```

customSearchTxtField

javax.swing.JTextField customSearchTxtField

lblSelectMethod
```
javax.swing.JLabel lblSelectMethod
```
comboBox
```
javax.swing.JComboBox<E> comboBox
```

Class operations.peakFitter.FitPeaksOperationGUI extends javax.swing.JDialog implements Serializable

serialVersionUID:: 1L

Serialized Fields

numberFormat
```
java.text.NumberFormat numberFormat
```
decimalFormat
```
java.text.DecimalFormat decimalFormat
```
imageType
```
java.lang.String imageType
```
chckbxInsideCells
```
javax.swing.JCheckBox chckbxInsideCells
```
customSearch
```
java.lang.String customSearch
```
btnCancel
```
javax.swing.JButton btnCancel
```
btnProcess
```
javax.swing.JButton btnProcess
```

fileTypeComboBox

javax.swing.JComboBox<E> fileTypeComboBox

channelComboBox

javax.swing.JComboBox<E> channelComboBox

types
```
java.lang.String[] types
```
canceled
```
boolean canceled
```
node
```
Node node
```
channel
```
java.lang.String channel
```
method
```
java.lang.String method
```
useDiscoidal
```
boolean useDiscoidal
```
useCells
```
boolean useCells
```
zScale
```
java.lang.String zScale
```

customSearchTxtField

javax.swing.JTextField customSearchTxtField

Package operations.tracking

Class operations.tracking.TrackingGUI extends javax.swing.JDialog implements Serializable

serialVersionUID:: 1L

Serialized Fields

lookAhead
```
java.lang.String lookAhead
```
btnCancel
```
javax.swing.JButton btnCancel
```
btnProcess
```
javax.swing.JButton btnProcess
```

fileTypeComboBox

javax.swing.JComboBox<E> fileTypeComboBox

channelComboBox

javax.swing.JComboBox<E> channelComboBox

methodComboBox
```
javax.swing.JComboBox<E> methodComboBox
```
channels
```
java.lang.String[] channels
```
types
```
java.lang.String[] types
```

customSearchTxtField

javax.swing.JTextField customSearchTxtField

canceled
```
boolean canceled
```
node
```
Node node
```
channel
```
java.lang.String channel
```
method
```
java.lang.String method
```
imagePath
```
java.lang.String imagePath
```
maxSteps
```
java.lang.String maxSteps
```
imageType
```
java.lang.String imageType
```
customSearch
```
java.lang.String customSearch
```
lblLookAhead
```
javax.swing.JLabel lblLookAhead
```

LookAheadtextField

javax.swing.JTextField LookAheadtextField

lblSlices
```
javax.swing.JLabel lblSlices
```
lblMaxStepSize
```
javax.swing.JLabel lblMaxStepSize
```
maxStepTextField
```
javax.swing.JTextField maxStepTextField
```
lblPixels
```
javax.swing.JLabel lblPixels
```

Package test
- Class test.MessageDialogFrame extends javax.swing.JFrame implements Serializable
  - Serialized Fields
    - confirmOptBtnPanel
```
javax.swing.JPanel confirmOptBtnPanel
```
      The confirm opt btn panel.
    - msgTypeBtnPanel
```
javax.swing.JPanel msgTypeBtnPanel
```
      The msg type btn panel.
    - textPanel
```
javax.swing.JPanel textPanel
```
      The text panel.
    - optPanel
```
javax.swing.JPanel optPanel
```
      The opt panel.
    - dialogTypePanel
```
javax.swing.JPanel dialogTypePanel
```
      The dialog type panel.
    - makeDialogPanel
```
javax.swing.JPanel makeDialogPanel
```
      The make dialog panel.
    - optionTypePanel
```
javax.swing.JPanel optionTypePanel
```
      The option type panel.
    - confirmOptBtnGrp
```
javax.swing.ButtonGroup confirmOptBtnGrp
```
      The confirm opt btn grp.
    - msgTypeBtnGrp
```
javax.swing.ButtonGroup msgTypeBtnGrp
```
      The msg type btn grp.
    - chooseOptPaneGrp
```
javax.swing.ButtonGroup chooseOptPaneGrp
```
      The choose opt pane grp.
    - optionBtnGrp
```
javax.swing.ButtonGroup optionBtnGrp
```
      The option btn grp.
    - messageText
```
javax.swing.JTextField messageText
```
      The message text.
    - titleText
```
javax.swing.JTextField titleText
```
      The title text.
    - tracker
```
javax.swing.JTextArea tracker
```
      The tracker.
    - optionIcon
```
javax.swing.Icon optionIcon
```
      The option icon.
    - warningIcon
```
javax.swing.Icon warningIcon
```
      The warning icon.
    - infoIcon
```
javax.swing.Icon infoIcon
```
      The info icon.
    - errorIcon
```
javax.swing.Icon errorIcon
```
      The error icon.
Package util
- Class util.SMBGenericDialog extends ij.gui.GenericDialog implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - buttons
```
java.util.ArrayList<E> buttons
```
      The buttons.

Serialized Form

Package analysis

Class analysis.Plot extends javax.swing.JComponent implements Serializable

Serialized Fields

transform

plotTypes

plotColors

plotLineWidths

font

xAxisLabel

yAxisLabel

caption

leftMargin

bottomMargin

plotCoordinates

pixelCoordinates

originalBounds

bounds

mousePosition

menu

zoomInMenuItem

zoomOutMenuItem

saveMenuItem

copyMenuItem

adjustAxisMenuItem

selectRegionMenuItem

zoomFactor

currentDirectory

isRegionSelection

regionSelection

Package data.stepFitter

Class data.stepFitter.Plot extends java.awt.Component implements Serializable

Serialized Fields

zoomFactor

leftMargin

bottomMargin

xSelected

ySelected

xValues

yValues

colors

types

thickness

plotBounds

visibleBounds

targetedVisibleBounds

markValues

markColors

lock

Package gui

Class gui.AboutPanel extends javax.swing.JFrame implements Serializable

Class gui.ChannelsDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

folder

acquisitionTextField

brightFieldTextField

greenTextField

redTextField

blueTextField

foundFilesTextArea

searchButton

okButton

cancelButton

canceled

Class gui.CodeTextPane extends javax.swing.JComponent implements Serializable

Serialized Fields

textPane

document

Class gui.DatabaseDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

database

pathTextField

chooseButton

okButton

cancelButton

canceled

Class gui.DatabaseTreeCellRenderer extends javax.swing.tree.DefaultTreeCellRenderer implements Serializable

Class gui.ExperimentDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

experiment