operations.peakFitter

Class FitPeaksOperation

java.lang.Object

operations.peakFitter.FitPeaksOperation

All Implemented Interfaces:

ContextElement, Operation

public class FitPeaksOperation
extends java.lang.Object
implements Operation

Field Summary

Fields

Modifier and Type	Field and Description
static double	SIGMA_TO_FWHM

Fields inherited from interface operations.Operation

name

Constructor Summary

Constructors

Constructor and Description
FitPeaksOperation(DatabaseModel treeModel)

Method Summary

Modifier and Type	Method and Description
void	finalize(Node node)
static java.util.ArrayList<ij.gui.Roi>	findPeaks(PeakFinder finder, ij.ImagePlus imp)
java.lang.String[]	getContext() Gets the context.
Node[]	getCreatedNodes()
java.lang.String	getName()
java.util.HashMap<java.lang.String,java.lang.String>	getParameters()
static void	main(java.lang.String[] args)
static void	runPlugInFilter(ij.plugin.filter.PlugInFilter filter, ij.ImagePlus imp)
static void	runPlugInFilter(ij.plugin.filter.PlugInFilter filter, ij.process.ImageProcessor ip)
static void	saveRoisAsZip(java.util.ArrayList<ij.gui.Roi> rois, java.lang.String filename)
boolean	setup(Node node)
void	visit(Experiment experiment)
void	visit(FieldOfView fieldOfView)
void	visit(FileNode fileNode)
void	visit(OperationNode operationNode)
void	visit(Root root)
void	visit(Sample sample)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SIGMA_TO_FWHM

public static final double SIGMA_TO_FWHM

Constructor Detail

FitPeaksOperation

public FitPeaksOperation(DatabaseModel treeModel)

Method Detail

getContext

public java.lang.String[] getContext()

Description copied from interface: ContextElement

Gets the context.

Specified by:

getContext in interface ContextElement

Returns:

the context

getName

public java.lang.String getName()

Specified by:

getName in interface Operation

setup

public boolean setup(Node node)

Specified by:

setup in interface Operation

finalize

public void finalize(Node node)

Specified by:

finalize in interface Operation

visit

public void visit(Root root)

Specified by:

visit in interface Operation

visit

public void visit(Experiment experiment)

Specified by:

visit in interface Operation

visit

public void visit(Sample sample)

Specified by:

visit in interface Operation

visit

public void visit(FieldOfView fieldOfView)

Specified by:

visit in interface Operation

visit

public void visit(FileNode fileNode)

Specified by:

visit in interface Operation

visit

public void visit(OperationNode operationNode)

Specified by:

visit in interface Operation

getCreatedNodes

public Node[] getCreatedNodes()

Specified by:

getCreatedNodes in interface Operation

getParameters

public java.util.HashMap<java.lang.String,java.lang.String> getParameters()

Specified by:

getParameters in interface Operation

runPlugInFilter

public static void runPlugInFilter(ij.plugin.filter.PlugInFilter filter,
                                   ij.ImagePlus imp)

runPlugInFilter

public static void runPlugInFilter(ij.plugin.filter.PlugInFilter filter,
                                   ij.process.ImageProcessor ip)

findPeaks

public static java.util.ArrayList<ij.gui.Roi> findPeaks(PeakFinder finder,
                                                        ij.ImagePlus imp)

saveRoisAsZip

public static void saveRoisAsZip(java.util.ArrayList<ij.gui.Roi> rois,
                                 java.lang.String filename)
                          throws java.io.IOException

Throws:

java.io.IOException

main

public static void main(java.lang.String[] args)