Uses of Class
model.Node

Packages that use Node

Package	Description
filters
gui
imageOperations
iSBatch
macros
model
operations
operations.cellIntensity
operations.cellOutlines
operations.cellularConcentration
operations.changePoint
operations.correlation
operations.diffusion
operations.flatImages
operations.focusLifetime
operations.locationMaps
operations.macro
operations.microbeTrackerIO
operations.peakFinder
operations.peakFitter
operations.tracking
utils

Uses of Node in filters

Methods in filters with parameters of type Node

Modifier and Type	Method and Description
boolean	NodeFilterInterface.accept(Node node) Accept.
boolean	NodeFilterClass.accept(Node node) Accept.
boolean	NodeFilter.accept(Node node) Accept.
boolean	ImageFilter.accept(Node node) Accept.
boolean	GenericFilter.accept(Node node)
boolean	ChannelFilter.accept(Node node)

Constructors in filters with parameters of type Node

Constructor and Description
FilterSet(Node node) Instantiates a new filter set.

Uses of Node in gui

Methods in gui that return types with arguments of type Node

Modifier and Type	Method and Description
java.util.ArrayList<Node>	FileSelectionDialog.getFileNodes()

Constructors in gui with parameters of type Node

Constructor and Description
FileSelectionDialog(Node node)
FileSelectionDialog(Node node, java.lang.String title)
RunMacroDialog(javax.swing.JFrame parent, DatabaseModel model, Node node) Instantiates a new run macro dialog.

Uses of Node in imageOperations

Constructor parameters in imageOperations with type arguments of type Node

Constructor and Description
NodeToImageStack(java.util.ArrayList<Node> nodes, java.lang.String channel, java.lang.String tag)

Uses of Node in iSBatch

Methods in iSBatch that return Node

Modifier and Type	Method and Description
Node[]	DebugProperties.getCreatedNodes()

Methods in iSBatch with parameters of type Node

Modifier and Type	Method and Description
void	DebugProperties.finalize(Node node)
static void	iSBatchPreferences.loadPreferences(Node root) Loads all preferences from a node object using reflection.
static void	iSBatchPreferences.savePreferences(Node root) Stores all preferences into a node object using reflection.
void	ISBatch.setContext(Node node)
boolean	DebugProperties.setup(Node node)

Uses of Node in macros

Methods in macros that return Node

Modifier and Type	Method and Description
Node[]	MacroOperation.getCreatedNodes()

Methods in macros with parameters of type Node

Modifier and Type	Method and Description
void	MacroOperation.finalize(Node node)
boolean	MacroOperation.setup(Node node)

Constructors in macros with parameters of type Node

Constructor and Description
MacroDialog2(Node node, DatabaseModel model) This is the constructor for the macro dialog.

Uses of Node in model

Subclasses of Node in model

Modifier and Type	Class and Description
class	Experiment The experiment class represents an experiment which contains samples, field of views and files.
class	FieldOfView
class	FileNode
class	OperationNode The Class OperationNode.
class	Root The root class represents the root of all experiments.
class	Sample

Fields in model declared as Node

Modifier and Type	Field and Description
static Node	MacroModel.root The root.

Methods in model that return Node

Modifier and Type	Method and Description
Node	Database.createNode(Node parent, java.lang.String type) Creates the node.
static Node	MacroModel.findNode(Node node, int hashCode) Find node.
Node	DatabaseModel.getChild(java.lang.Object parent, int index) Gets the child.
Node	Node.getParent()
Node	DatabaseModel.getRoot() Gets the root.
Node	Database.getRoot() Read.

Methods in model that return types with arguments of type Node

Modifier and Type	Method and Description
java.util.ArrayList<Node>	Node.getChildren()
java.util.ArrayList<Node>	Node.getChildren(NodeFilterInterface filter)
java.util.ArrayList<Node>	Node.getDescendents(NodeFilterInterface filter)

Methods in model with parameters of type Node

Modifier and Type	Method and Description
void	DatabaseModel.addNode(Node parent, Node child) Adds the node.
Node	Database.createNode(Node parent, java.lang.String type) Creates the node.
static Node	MacroModel.findNode(Node node, int hashCode) Find node.
java.lang.Object[]	DatabaseModel.getPathToRoot(Node aNode) Gets the path to root.
void	Importer.importFile(Node node, java.io.File file)
void	Importer.importFile(Node node, java.io.File file, java.lang.String channel, java.lang.String name, java.lang.String path)
void	Importer.importFiles(Node fieldOfView) Import files.
void	Database.read(Node parentNode, long parentId) Read.
void	DatabaseModel.removeNode(Node parent, Node child) Removes the node.
void	Node.setParent(Node parent)
void	DatabaseModel.setRoot(Node root) Sets the root.
void	Database.write(Node root) Write.
void	Database.write(Node node, long parentId) Write.

Constructors in model with parameters of type Node

Constructor and Description
DatabaseModel(Node root) Instantiates a new database model.
FileNode(Node parent)
Node(Node parent, NodeType nodeType)
Node(Node parent, java.lang.String type)
OperationNode(Node parent) Instantiates a new operation node.

Uses of Node in operations

Methods in operations that return Node

Modifier and Type	Method and Description
Node[]	Operation.getCreatedNodes()
Node[]	MacroOperation.getCreatedNodes() Gets the created nodes.
Node[]	ImportOperation.getCreatedNodes()
Node[]	CopyOfMacroOperation.getCreatedNodes() Gets the created nodes.
Node[]	AddNodeOperation.getCreatedNodes()

Methods in operations with parameters of type Node

Modifier and Type	Method and Description
void	Operation.finalize(Node node)
void	MacroOperation.finalize(Node node) Finalize.
void	ImportOperation.finalize(Node node)
void	CopyOfMacroOperation.finalize(Node node) Finalize.
void	AddNodeOperation.finalize(Node node)
void	MacroOperation.runMacro(Node node) Run macro.
void	CopyOfMacroOperation.runMacro(Node node) Run macro.
boolean	Operation.setup(Node node)
boolean	MacroOperation.setup(Node node) Setup.
boolean	ImportOperation.setup(Node node)
boolean	CopyOfMacroOperation.setup(Node node) Setup.
boolean	AddNodeOperation.setup(Node node)

Constructors in operations with parameters of type Node

Constructor and Description
OperationRunner(DatabaseModel model, Operation operation, Node node) Instantiates a new operation runner.

Uses of Node in operations.cellIntensity

Methods in operations.cellIntensity that return Node

Modifier and Type	Method and Description
Node[]	CellIntensity.getCreatedNodes()

Methods in operations.cellIntensity with parameters of type Node

Modifier and Type	Method and Description
void	CellIntensity.finalize(Node node)
boolean	CellIntensity.setup(Node node)

Uses of Node in operations.cellOutlines

Methods in operations.cellOutlines that return Node

Modifier and Type	Method and Description
Node[]	CellOutlines.getCreatedNodes() Gets the created nodes.

Methods in operations.cellOutlines with parameters of type Node

Modifier and Type	Method and Description
void	CellOutlines.finalize(Node node) Finalize.
boolean	CellOutlines.setup(Node node) Setup.

Uses of Node in operations.cellularConcentration

Methods in operations.cellularConcentration that return Node

Modifier and Type	Method and Description
Node[]	CellularConcentration.getCreatedNodes() Gets the created nodes.

Methods in operations.cellularConcentration with parameters of type Node

Modifier and Type	Method and Description
void	CellularConcentration.finalize(Node node) Finalize.
boolean	CellularConcentration.setup(Node node) Setup.

Constructors in operations.cellularConcentration with parameters of type Node

Constructor and Description
CellularConcentrationGUI(Node node) Instantiates a new cellular concentration gui.

Uses of Node in operations.changePoint

Methods in operations.changePoint that return Node

Modifier and Type	Method and Description
Node[]	ChangePoint.getCreatedNodes() Gets the created nodes.

Methods in operations.changePoint with parameters of type Node

Modifier and Type	Method and Description
void	ChangePoint.finalize(Node node) Finalize.
boolean	ChangePoint.setup(Node node) Setup.

Constructors in operations.changePoint with parameters of type Node

Constructor and Description
ChangePointGUI(Node node) Instantiates a new change point gui.

Uses of Node in operations.correlation

Methods in operations.correlation that return Node

Modifier and Type	Method and Description
Node[]	CorrelationOperation.getCreatedNodes() Gets the created nodes.

Methods in operations.correlation with parameters of type Node

Modifier and Type	Method and Description
void	CorrelationOperation.finalize(Node node) Finalize.
boolean	CorrelationOperation.setup(Node node) Setup.

Constructors in operations.correlation with parameters of type Node

Constructor and Description
CorrelationOperationGui(Node node) Instantiates a new correlation operation gui.

Uses of Node in operations.diffusion

Methods in operations.diffusion that return Node

Modifier and Type	Method and Description
Node[]	DiffusioOperation.getCreatedNodes() Gets the created nodes.

Methods in operations.diffusion with parameters of type Node

Modifier and Type	Method and Description
void	DiffusioOperation.finalize(Node node) Finalize.
void	DiffusioOperation.run(Node node) Run.
boolean	DiffusioOperation.setup(Node node) Setup.

Constructors in operations.diffusion with parameters of type Node

Constructor and Description
DiffusionOperationGUI(Node node) Instantiates a new diffusion operation gui.

Uses of Node in operations.flatImages

Methods in operations.flatImages that return Node

Modifier and Type	Method and Description
Node[]	SetBackGround.getCreatedNodes()
Node[]	FlattenOperation.getCreatedNodes()

Methods in operations.flatImages with parameters of type Node

Modifier and Type	Method and Description
void	SetBackGround.finalize(Node node)
void	FlattenOperation.finalize(Node node)
boolean	SetBackGround.setup(Node node)
boolean	FlattenOperation.setup(Node node)

Constructors in operations.flatImages with parameters of type Node

Constructor and Description
SetBackgroundGui(Node node)

Uses of Node in operations.focusLifetime

Methods in operations.focusLifetime that return Node

Modifier and Type	Method and Description
Node[]	FocusLifetimes.getCreatedNodes()
Node[]	CopyOfFocusLifetimes.getCreatedNodes() Gets the created nodes.

Methods in operations.focusLifetime with parameters of type Node

Modifier and Type	Method and Description
void	FocusLifetimes.finalize(Node node)
void	CopyOfFocusLifetimes.finalize(Node node) Finalize.
boolean	FocusLifetimes.setup(Node node)
boolean	CopyOfFocusLifetimes.setup(Node node) Setup.

Constructors in operations.focusLifetime with parameters of type Node

Constructor and Description
FocusLifetimeGUI(Node node) Instantiates a new focus lifetime gui.

Uses of Node in operations.locationMaps

Methods in operations.locationMaps that return Node

Modifier and Type	Method and Description
Node[]	LocationMaps.getCreatedNodes() Gets the created nodes.

Methods in operations.locationMaps with parameters of type Node

Modifier and Type	Method and Description
void	LocationMaps.finalize(Node node) Finalize.
boolean	LocationMaps.setup(Node node) Setup.

Constructors in operations.locationMaps with parameters of type Node

Constructor and Description
LocationMapsGui(Node node) Instantiates a new location maps gui.

Uses of Node in operations.macro

Methods in operations.macro that return Node

Modifier and Type	Method and Description
Node[]	MacroOperation2.getCreatedNodes() Gets the created nodes.

Methods in operations.macro with parameters of type Node

Modifier and Type	Method and Description
void	MacroOperation2.finalize(Node node) Finalize.
void	MacroOperation2.runMacro(Node node) Run macro.
boolean	MacroOperation2.setup(Node node) Setup.

Constructors in operations.macro with parameters of type Node

Constructor and Description
MacroOperationGUI(Node node)

Uses of Node in operations.microbeTrackerIO

Methods in operations.microbeTrackerIO that return Node

Modifier and Type	Method and Description
Node[]	MicrobeTrackerIO.getCreatedNodes()

Methods in operations.microbeTrackerIO with parameters of type Node

Modifier and Type	Method and Description
void	MicrobeTrackerIO.finalize(Node node)
boolean	MicrobeTrackerIO.setup(Node node) Setup.

Constructors in operations.microbeTrackerIO with parameters of type Node

Constructor and Description
MicrobeTrackerIOGui(Node node) Instantiates a new MicrobeTracker I/O Graphic interface.

Uses of Node in operations.peakFinder

Methods in operations.peakFinder that return Node

Modifier and Type	Method and Description
Node[]	FindPeaksOperation.getCreatedNodes()

Methods in operations.peakFinder with parameters of type Node

Modifier and Type	Method and Description
void	FindPeaksOperation.finalize(Node node)
boolean	FindPeaksOperation.setup(Node node)

Constructors in operations.peakFinder with parameters of type Node

Constructor and Description
FindPeaksGui(Node node)

Uses of Node in operations.peakFitter

Methods in operations.peakFitter that return Node

Modifier and Type	Method and Description
Node[]	PeakFitter2.getCreatedNodes()
Node[]	FitPeaksOperation.getCreatedNodes()

Methods in operations.peakFitter with parameters of type Node

Modifier and Type	Method and Description
void	PeakFitter2.finalize(Node node)
void	FitPeaksOperation.finalize(Node node)
boolean	PeakFitter2.setup(Node node)
boolean	FitPeaksOperation.setup(Node node)

Constructors in operations.peakFitter with parameters of type Node

Constructor and Description
CopyOfPeakFitterGui(Node node)
FitPeaksOperationGUI(Node node)

Uses of Node in operations.tracking

Methods in operations.tracking that return Node

Modifier and Type	Method and Description
Node[]	Tracking.getCreatedNodes()
Node[]	CopyOfTracking.getCreatedNodes()

Methods in operations.tracking with parameters of type Node

Modifier and Type	Method and Description
void	Tracking.finalize(Node node)
void	CopyOfTracking.finalize(Node node)
void	CopyOfTracking.run(Node node)
boolean	Tracking.setup(Node node)
boolean	CopyOfTracking.setup(Node node)

Constructors in operations.tracking with parameters of type Node

Constructor and Description
TrackingGUI(Node node)

Uses of Node in utils

Methods in utils with parameters of type Node

Modifier and Type	Method and Description
static java.lang.String	FileNames.getOutputFilename(Node node, java.lang.String tagName, java.lang.String extension)
static java.io.File	MultiFilter.getTableRowsInsideCells(Node currentNode, java.lang.String path)
static void	MultiFilter.getTableRowsInsideCells(Node currentNode, java.lang.String path, java.io.File f)
static javax.swing.ComboBoxModel<java.lang.String>	ModelUtils.getUniqueChannels(Node node)
static javax.swing.ComboBoxModel<java.lang.String>	ModelUtils.getUniqueChannelsFromDatabase(Node node)

Method parameters in utils with type arguments of type Node

Modifier and Type	Method and Description
static javax.swing.ComboBoxModel<java.lang.String>	ModelUtils.getUniqueChannels(java.util.ArrayList<Node> fileNodes)
static javax.swing.ComboBoxModel<java.lang.String>	ModelUtils.getUniques(java.util.ArrayList<Node> fileNodes, java.lang.String propertyName)
static javax.swing.ComboBoxModel<java.lang.String>	ModelUtils.getUniquesExtension(java.util.ArrayList<Node> fileNodes)
static javax.swing.ComboBoxModel<java.lang.String>	ModelUtils.getUniqueTags(java.util.ArrayList<Node> fileNodes)