- CellIntensity - Class in operations.cellIntensity
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- CellIntensity(DatabaseModel) - Constructor for class operations.cellIntensity.CellIntensity
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- CellOutlines - Class in operations.cellOutlines
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The Class CellOutlines.
- CellOutlines(DatabaseModel) - Constructor for class operations.cellOutlines.CellOutlines
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Instantiates a new cell outlines.
- CellROI - Class in operations.microbeTrackerIO
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The Class CellROI.
- CellROI(ArrayList<Point>) - Constructor for class operations.microbeTrackerIO.CellROI
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Instantiates a new cell roi.
- CellularConcentration - Class in operations.cellularConcentration
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The Class CellularConcentration.
- CellularConcentration(DatabaseModel) - Constructor for class operations.cellularConcentration.CellularConcentration
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Instantiates a new cellular concentration.
- CellularConcentrationGUI - Class in operations.cellularConcentration
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The Class CellularConcentrationGUI.
- CellularConcentrationGUI(Node) - Constructor for class operations.cellularConcentration.CellularConcentrationGUI
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Instantiates a new cellular concentration gui.
- cellularROI - Class in model.roi
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The Class cellularROI.
- cellularROI() - Constructor for class model.roi.cellularROI
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- center() - Method in class operations.microbeTrackerIO.Line
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Center.
- changedUpdate(DocumentEvent) - Method in class gui.CodeTextPane
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Changed update.
- ChangePoint - Class in operations.changePoint
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The Class ChangePoint.
- ChangePoint(DatabaseModel) - Constructor for class operations.changePoint.ChangePoint
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Instantiates a new change point.
- ChangePointGUI - Class in operations.changePoint
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The Class ChangePointGUI.
- ChangePointGUI(Node) - Constructor for class operations.changePoint.ChangePointGUI
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Instantiates a new change point gui.
- Channel - Enum in model.parameters
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- ChannelComboBox() - Method in class operations.macro.MacroOperationGUI
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Channel combo box.
- ChannelFilter - Class in filters
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- ChannelFilter(String) - Constructor for class filters.ChannelFilter
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- ChannelsDialog - Class in gui
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The Class ChannelsDialog.
- ChannelsDialog(JFrame, File) - Constructor for class gui.ChannelsDialog
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Instantiates a new channels dialog.
- chiSq - Variable in class analysis.LevenbergMarquardt
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- CIRCLE - Static variable in class data.stepFitter.Plot
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The Constant CIRCLE.
- clear() - Method in class analysis.Plot
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Clear.
- clear() - Method in class data.stepFitter.Plot
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Clear.
- clear() - Method in class data.stepFitter.StepFitter
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Clear.
- clearResultsTable() - Static method in class utils.IJUtils
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- clearROIManager() - Static method in class utils.IJUtils
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- closestSegmentTo(Point) - Method in class operations.microbeTrackerIO.Mesh
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Closest segment to.
- CodeTextPane - Class in gui
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The Class CodeTextPane.
- CodeTextPane() - Constructor for class gui.CodeTextPane
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Instantiates a new code text pane.
- contains(Enum[], String) - Static method in class utils.EnumUtils
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Contains
Check if the input name is contained in the Enum
- contains(Class<T>, String) - Static method in class utils.EnumUtils
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Contains
Check if the input name is contained in the Enum
This matches exactly with the Enum name.
- context - package context
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- contextChanged(ContextElement) - Method in interface context.ContextListener
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Context changed.
- contextChanged(ContextElement) - Method in class gui.OperationButton
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Context changed.
- ContextElement - Interface in context
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The Interface ContextElement.
- ContextHandler - Class in context
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The Class ContextHandler.
- ContextHandler() - Constructor for class context.ContextHandler
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- ContextListener - Interface in context
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The listener interface for receiving context events.
- convertIntegers(ArrayList<Integer>) - Static method in class test.RoiOperations
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- convertIntegers(ArrayList<Integer>) - Static method in class utils.RoiUtils
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- copyArray(String[], String[]) - Static method in class utils.MultiFilter
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- CopyOfFocusLifetimes - Class in operations.focusLifetime
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The Class FocusLifetimes.
- CopyOfFocusLifetimes(DatabaseModel) - Constructor for class operations.focusLifetime.CopyOfFocusLifetimes
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Instantiates a new focus lifetimes.
- CopyOfMacroOperation - Class in operations
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The Class CopyOfMacroOperation.
- CopyOfMacroOperation(JFrame, DatabaseModel) - Constructor for class operations.CopyOfMacroOperation
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Instantiates a new copy of macro operation.
- CopyOfPeakFitterGui - Class in operations.peakFitter
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- CopyOfPeakFitterGui(Node) - Constructor for class operations.peakFitter.CopyOfPeakFitterGui
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- CopyOfTracking - Class in operations.tracking
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- CopyOfTracking(DatabaseModel) - Constructor for class operations.tracking.CopyOfTracking
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- copyPlot() - Method in class analysis.Plot
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Copy plot.
- CorrelationOperation - Class in operations.correlation
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The Class CorrelationOperation.
- CorrelationOperation(DatabaseModel) - Constructor for class operations.correlation.CorrelationOperation
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Instantiates a new correlation operation.
- CorrelationOperationGui - Class in operations.correlation
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The Class CorrelationOperationGui.
- CorrelationOperationGui(Node) - Constructor for class operations.correlation.CorrelationOperationGui
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Instantiates a new correlation operation gui.
- countOccurrences(String, char) - Static method in class model.FileNode
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- createNode(Node, String) - Method in class model.Database
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Creates the node.
- createQueries(BufferedReader) - Method in class utils.SQLReader
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Creates the queries.
- createTables() - Method in class model.Database
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Creates the tables.
- CropSaveImage - Class in operations.peakFitter
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- CropSaveImage() - Constructor for class operations.peakFitter.CropSaveImage
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- customROI - Class in model.roi
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The Class customROI.
- customROI() - Constructor for class model.roi.customROI
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