- read(Node, long) - Method in class model.Database
-
Read.
- readTestMacro() - Method in class test.MacroOperationTest
-
Read test macro.
- reconstruction(ResultsTable) - Method in class utils.ImageOperations
-
- reconstruction(ResultsTable, int, int, int, int) - Method in class utils.ImageOperations
-
- redRegEx - Static variable in class model.Importer
-
The Red channel regex.
- removeNode(Node, Node) - Method in class model.DatabaseModel
-
Removes the node.
- removeNode() - Method in class test.MacroOperationTest
-
Removes the node.
- removeRange(int, int) - Method in class table.ResultsTableList
-
Removes the range.
- removeTreeModelListener(TreeModelListener) - Method in class model.AbstractTreeModel
-
Removes the tree model listener.
- removeTreeModelListener(TreeModelListener) - Method in class model.DatabaseModel
-
Removes the tree model listener.
- removeUpdate(DocumentEvent) - Method in class gui.CodeTextPane
-
Removes the update.
- requireXProjection() - Method in class operations.correlation.CorrelationOperationGui
-
Require x projection.
- requireYProjection() - Method in class operations.correlation.CorrelationOperationGui
-
Require y projection.
- resetBounds() - Method in class analysis.Plot
-
Reset bounds.
- ResultsFitter - Class in analysis
-
The Class ResultsFitter.
- ResultsFitter() - Constructor for class analysis.ResultsFitter
-
- ResultsGroupFilter - Class in table
-
The Class ResultsGroupFilter.
- ResultsGroupFilter() - Constructor for class table.ResultsGroupFilter
-
- ResultsTableFilter - Class in table
-
The Class ResultsTableFilter.
- ResultsTableFilter() - Constructor for class table.ResultsTableFilter
-
Instantiates a new results table filter.
- ResultsTableFilter(ResultsTable) - Constructor for class table.ResultsTableFilter
-
Instantiates a new results table filter.
- ResultsTableList - Class in table
-
The Class ResultsTableList.
- ResultsTableList(ResultsTable) - Constructor for class table.ResultsTableList
-
Instantiates a new results table list.
- ResultsTableOpener - Class in table
-
The Class ResultsTableOpener.
- ResultsTableOpener() - Constructor for class table.ResultsTableOpener
-
- ResultsTablePlay - Class in test
-
- ResultsTablePlay() - Constructor for class test.ResultsTablePlay
-
- ResultsTablePlotter - Class in table
-
The Class ResultsTablePlotter.
- ResultsTablePlotter() - Constructor for class table.ResultsTablePlotter
-
Instantiates a new results table plotter.
- ResultsTablePlotter(ResultsTable) - Constructor for class table.ResultsTablePlotter
-
Instantiates a new results table plotter.
- ResultsTableSorter - Class in table
-
The Class ResultsTableSorter.
- ResultsTableSorter() - Constructor for class table.ResultsTableSorter
-
Instantiates a new results table sorter.
- ResultsTableSorter(ResultsTable) - Constructor for class table.ResultsTableSorter
-
Instantiates a new results table sorter.
- ResultsTableUtil - Class in table
-
The Class ResultsTableUtil.
- ResultsTableUtil() - Constructor for class table.ResultsTableUtil
-
- ResultsTableView - Class in table
-
The Class ResultsTableView.
- ResultsTableView() - Constructor for class table.ResultsTableView
-
Instantiates a new results table view.
- ResultsTableView(ResultsTable, String) - Constructor for class table.ResultsTableView
-
Instantiates a new results table view.
- ROIBuilder - Class in operations.microbeTrackerIO
-
- ROIBuilder(ArrayList<Point>) - Constructor for class operations.microbeTrackerIO.ROIBuilder
-
- RoiOperations - Class in test
-
- RoiOperations() - Constructor for class test.RoiOperations
-
- RoisInsideCells - Class in operations.peakFinder
-
- RoisInsideCells() - Constructor for class operations.peakFinder.RoisInsideCells
-
- RoiType - Enum in model.parameters
-
Categories of Regions of interest (ROI).
- RoiUtils - Class in utils
-
- RoiUtils() - Constructor for class utils.RoiUtils
-
- root - Static variable in class model.MacroModel
-
The root.
- Root - Class in model
-
The root class represents the root of all experiments.
- Root(String, String) - Constructor for class model.Root
-
- rSquared - Variable in class operations.LevenbergMarquardt
-
The r squared.
- run(ImageProcessor) - Method in class analysis.DriftCorrection
-
Run.
- run(String) - Method in class analysis.MeanSquareDisplacement
-
Run.
- run(String) - Method in class analysis.MeanSquareDisplacement2
-
Run.
- run(String) - Method in class analysis.PalmReconstructor
-
Run.
- run(String) - Method in class analysis.ParticleTracker
-
Run.
- run(ImagePlus) - Method in class analysis.PeakFinder
-
Run.
- run(ImageProcessor) - Method in class analysis.PeakFinder
-
Run.
- run(ImageProcessor) - Method in class analysis.PeakFitter
-
- run(String) - Method in class analysis.ResultsFitter
-
Run.
- run(String) - Method in class analysis.StepSizeDistribution
-
Run.
- run() - Method in class data.stepFitter.Plot
-
Run.
- run() - Method in class gui.CodeTextPane
-
Run.
- run() - Method in class gui.RunMacroDialog
-
Run.
- run(String) - Method in class iSBatch.DebugProperties
-
- run() - Method in class macros.MacroDialog2
-
- run(String) - Method in class operations.cellIntensity.CellIntensity
-
- run(Node) - Method in class operations.diffusion.DiffusioOperation
-
Run.
- run(String) - Method in class operations.focusLifetime.FocusLifetimes
-
- run(String) - Method in class operations.microbeTrackerIO.Main
-
Run.
- run(String) - Method in class operations.microbeTrackerIO.ROIBuilder
-
- run() - Method in class operations.OperationRunner
-
Run.
- run(String) - Method in class operations.peakFinder.FindPeaksOperation
-
- run(String) - Method in class operations.peakFitter.PeakFitter2
-
- run(Node) - Method in class operations.tracking.CopyOfTracking
-
- run(String) - Method in class operations.tracking.Tracking
-
- run(ImageProcessor) - Method in class process.BackgroundRemover
-
Run.
- run(ImageProcessor) - Method in class process.DiscoidalAveragingFilter
-
Run.
- run(ImageProcessor) - Method in class process.HoughCircles
-
Run.
- run(ImageProcessor) - Method in class process.MovingAverageFilter
-
Run.
- run(String) - Method in class table.ResultsGroupFilter
-
Run.
- run(String) - Method in class table.ResultsTableFilter
-
Run.
- run(String) - Method in class table.ResultsTableOpener
-
Run.
- run(String) - Method in class table.ResultsTablePlotter
-
Run.
- run(String) - Method in class table.ResultsTableSorter
-
Run.
- run(String) - Method in class table.ResultsTableView
-
Run.
- run() - Method in class test.MacroOperationTest
-
Run.
- run(String) - Method in class util.Update
-
Run.
- runMacro(FileNode, String) - Method in class macros.MacroDialog2
-
- runMacro(Node) - Method in class operations.CopyOfMacroOperation
-
Run macro.
- runMacro(Node) - Method in class operations.macro.MacroOperation2
-
Run macro.
- runMacro(Node) - Method in class operations.MacroOperation
-
Run macro.
- runMacro() - Method in class test.MacroOperationTest
-
Run macro.
- RunMacroDialog - Class in gui
-
The Class RunMacroDialog.
- RunMacroDialog(JFrame, DatabaseModel, Node) - Constructor for class gui.RunMacroDialog
-
Instantiates a new run macro dialog.
- runner(SQLReader) - Method in class utils.SQLReader
-
Runner.
- runPlugInFilter(PlugInFilter, ImagePlus) - Static method in class operations.peakFitter.FitPeaksOperation
-
- runPlugInFilter(PlugInFilter, ImageProcessor) - Static method in class operations.peakFitter.FitPeaksOperation
-
- runPlugInFilter(PlugInFilter, ImagePlus) - Static method in class test.PeakFinderTest
-
Run plug in filter.
- runPlugInFilter(PlugInFilter, ImageProcessor) - Static method in class test.PeakFinderTest
-
Run plug in filter.
- runPlugInFilter(PlugInFilter, ImagePlus) - Static method in class test.TestPlugInFilter
-
Run plug in filter.
- runPlugInFilter(PlugInFilter, ImageProcessor) - Static method in class test.TestPlugInFilter
-
Run plug in filter.