- Sample - Class in model
-
- Sample(Experiment) - Constructor for class model.Sample
-
- SampleDialog - Class in gui
-
The Class SampleDialog.
- SampleDialog(Frame, Sample) - Constructor for class gui.SampleDialog
-
Instantiates a new sample dialog.
- save(File) - Method in class gui.LogPanel
-
Save.
- saveAllFits() - Method in class data.stepFitter.Main
-
Save all fits.
- saveDatabase() - Method in class iSBatch.ISBatch
-
- saveFile() - Method in class data.stepFitter.Main
-
Save file.
- saveImage() - Method in class data.stepFitter.Main
-
Save image.
- saveListOfRoisAsZip(ArrayList<Roi>, String) - Static method in class operations.peakFinder.RoisInsideCells
-
- saveListOfRoisAsZip(ArrayList<Roi>, String) - Static method in class utils.FileIOUtils
-
- saveMacro() - Method in class test.MacroOperationTest
-
Save macro.
- savePlot() - Method in class analysis.Plot
-
Save plot.
- savePlot(File) - Method in class analysis.Plot
-
Save plot.
- savePreferences(Node) - Static method in class iSBatch.iSBatchPreferences
-
Stores all preferences into a node object using reflection.
- savePreferences() - Method in class util.SMBGenericDialog
-
Save preferences.
- saveRoisAsZip(ArrayList<Roi>, String) - Static method in class operations.peakFitter.FitPeaksOperation
-
- saveRoisAsZip(ArrayList<Roi>, String) - Static method in class test.MatFileToROI
-
Save rois as zip.
- saveRoisAsZip(ArrayList<Roi>, String) - Static method in class test.PeakFinderTest
-
Save rois as zip.
- saveRoisAsZip(ArrayList<Roi>, String) - Static method in class test.TestPlugInFilter
-
Save rois as zip.
- Segment - Class in operations.microbeTrackerIO
-
The Class Segment.
- Segment(Line, Line) - Constructor for class operations.microbeTrackerIO.Segment
-
Instantiates a new segment.
- SELECTION_RADIUS - Static variable in class iSBatch.iSBatchPreferences
-
- selectionRadius - Variable in class operations.peakFinder.FindPeaksGui
-
- selectionRadius - Variable in class operations.peakFitter.CopyOfPeakFitterGui
-
- set(int, double[]) - Method in class table.ResultsTableList
-
Sets the.
- SetBackGround - Class in operations.flatImages
-
- SetBackGround(DatabaseModel) - Constructor for class operations.flatImages.SetBackGround
-
Instantiates a new sets the back ground.
- SetBackgroundGui - Class in operations.flatImages
-
- SetBackgroundGui(Node) - Constructor for class operations.flatImages.SetBackgroundGui
-
- setBounds(double, double, double, double) - Method in class analysis.Plot
-
Sets the bounds.
- setCaption(String) - Method in class analysis.Plot
-
Sets the caption.
- setCellROIPath(String) - Method in class model.Node
-
- setCircleOffsets(int, int, int) - Method in class process.DiscoidalAveragingFilter
-
Sets the circle offsets.
- setContext(ContextElement) - Method in class context.ContextHandler
-
Sets the context.
- setContext(Node) - Method in class iSBatch.ISBatch
-
- setFitRadius(int) - Method in class utils.ImageOperations
-
- setFont(Font) - Method in class analysis.Plot
-
Sets the font.
- setFwhm(double) - Method in class utils.ImageOperations
-
- setInnerRadius(int) - Method in class utils.ImageOperations
-
- setLengthOffset(double) - Method in class operations.microbeTrackerIO.Segment
-
Sets the length offset.
- setMagnification(double) - Method in class utils.ImageOperations
-
- setMaxError(double[]) - Method in class utils.ImageOperations
-
- setMinimumDistance(int) - Method in class utils.ImageOperations
-
- setNPasses(int) - Method in class analysis.PeakFinder
-
Sets the n passes.
- setNPasses(int) - Method in class analysis.PeakFitter
-
Sets the n passes.
- setNPasses(int) - Method in class process.BackgroundRemover
-
Sets the n passes.
- setNPasses(int) - Method in class process.DiscoidalAveragingFilter
-
Sets the n passes.
- setOriginalBounds(double, double, double, double) - Method in class analysis.Plot
-
Sets the original bounds.
- setOuterRadius(int) - Method in class utils.ImageOperations
-
- setParent(Node) - Method in class model.Node
-
- setPlotBounds(double, double, double, double) - Method in class data.stepFitter.Plot
-
Sets the plot bounds.
- setProperty(String, String) - Method in class model.Node
-
- setRoot(Node) - Method in class model.DatabaseModel
-
Sets the root.
- setTags(ArrayList<String>) - Method in class model.Node
-
- setText(String) - Method in class gui.CodeTextPane
-
Sets the text.
- setThreshold(double) - Method in class utils.ImageOperations
-
- setType(String) - Method in class model.Node
-
- setup(String, ImagePlus) - Method in class analysis.DriftCorrection
-
Setup.
- setup(String, ImagePlus) - Method in class analysis.PeakFinder
-
Setup.
- setup(String, ImagePlus) - Method in class analysis.PeakFitter
-
Setup.
- setup(Node) - Method in class iSBatch.DebugProperties
-
- setup(Node) - Method in class macros.MacroOperation
-
- setup(Node) - Method in class operations.AddNodeOperation
-
- setup(Node) - Method in class operations.cellIntensity.CellIntensity
-
- setup(Node) - Method in class operations.cellOutlines.CellOutlines
-
Setup.
- setup(Node) - Method in class operations.cellularConcentration.CellularConcentration
-
Setup.
- setup(Node) - Method in class operations.changePoint.ChangePoint
-
Setup.
- setup(Node) - Method in class operations.CopyOfMacroOperation
-
Setup.
- setup(Node) - Method in class operations.correlation.CorrelationOperation
-
Setup.
- setup(Node) - Method in class operations.diffusion.DiffusioOperation
-
Setup.
- setup(Node) - Method in class operations.flatImages.FlattenOperation
-
- setup(Node) - Method in class operations.flatImages.SetBackGround
-
- setup(Node) - Method in class operations.focusLifetime.CopyOfFocusLifetimes
-
Setup.
- setup(Node) - Method in class operations.focusLifetime.FocusLifetimes
-
- setup(Node) - Method in class operations.ImportOperation
-
- setup(Node) - Method in class operations.locationMaps.LocationMaps
-
Setup.
- setup(Node) - Method in class operations.macro.MacroOperation2
-
Setup.
- setup(Node) - Method in class operations.MacroOperation
-
Setup.
- setup(Node) - Method in class operations.microbeTrackerIO.MicrobeTrackerIO
-
Setup.
- setup(Node) - Method in interface operations.Operation
-
- setup(Node) - Method in class operations.peakFinder.FindPeaksOperation
-
- setup(Node) - Method in class operations.peakFitter.FitPeaksOperation
-
- setup(Node) - Method in class operations.peakFitter.PeakFitter2
-
- setup(Node) - Method in class operations.tracking.CopyOfTracking
-
- setup(Node) - Method in class operations.tracking.Tracking
-
- setup(String, ImagePlus) - Method in class process.BackgroundRemover
-
Setup.
- setup(String, ImagePlus) - Method in class process.DiscoidalAveragingFilter
-
Setup.
- setup(String, ImagePlus) - Method in class process.HoughCircles
-
Setup.
- setup(String, ImagePlus) - Method in class process.MovingAverageFilter
-
Setup.
- setUseDiscoidalFilter(boolean) - Method in class utils.ImageOperations
-
- setUseStandardDeviation(boolean) - Method in class utils.ImageOperations
-
- setxAxisLabel(String) - Method in class analysis.Plot
-
Sets the x axis label.
- setyAxisLabel(String) - Method in class analysis.Plot
-
Sets the y axis label.
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class analysis.PeakFinder
-
Show dialog.
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class analysis.PeakFitter
-
Show dialog.
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class process.BackgroundRemover
-
Show dialog.
- showDialog(ImagePlus, String, PlugInFilterRunner) - Method in class process.DiscoidalAveragingFilter
-
Show dialog.
- showDialog() - Method in class utils.ImageOperations
-
- showPlot(String) - Method in class analysis.Plot
-
Show plot.
- showSteps() - Method in class data.stepFitter.Main
-
Show steps.
- SIGMA_TO_FWHM - Static variable in class analysis.PeakFitter
-
- SIGMA_TO_FWHM - Static variable in class operations.peakFitter.FitPeaksOperation
-
- SIGMA_TO_FWHM - Static variable in class operations.peakFitter.PeakFitter2
-
- SIGMA_TO_FWHM - Static variable in class utils.ImageOperations
-
- size() - Method in class table.ResultsTableList
-
Size.
- SMBGenericDialog - Class in util
-
The Class SMBGenericDialog.
- SMBGenericDialog(String) - Constructor for class util.SMBGenericDialog
-
Instantiates a new SMB generic dialog.
- SNR_THRESHOLD - Static variable in class iSBatch.iSBatchPreferences
-
- SNRThreshold - Variable in class operations.peakFinder.FindPeaksGui
-
- SNRThreshold - Variable in class operations.peakFitter.CopyOfPeakFitterGui
-
- solve(double[][], double[], double[], int, double[], boolean[], double[], double) - Method in class analysis.LevenbergMarquardt
-
Solve.
- solve(double[][], double[], double[], int, double[], boolean[], double[], double) - Method in class operations.LevenbergMarquardt
-
Solve.
- sort(ResultsTable, boolean, String...) - Static method in class table.ResultsTableSorter
-
Sort.
- SplitTest - Class in test
-
The Class SplitTest.
- SplitTest() - Constructor for class test.SplitTest
-
- SQLReader - Class in utils
-
The Class SQLReader.
- SQLReader() - Constructor for class utils.SQLReader
-
- Stack_Deflicker(ImagePlus) - Static method in class operations.microbeTrackerIO.MicrobeTrackerIO
-
- StepFitter - Class in data.stepFitter
-
The Class StepFitter.
- StepFitter(double[], double) - Constructor for class data.stepFitter.StepFitter
-
Instantiates a new step fitter.
- StepSizeDistribution - Class in analysis
-
The Class StepSizeDistribution.
- StepSizeDistribution() - Constructor for class analysis.StepSizeDistribution
-
- stopMacro() - Method in class test.MacroOperationTest
-
Stop macro.
- StringOperations - Class in utils
-
- StringOperations() - Constructor for class utils.StringOperations
-
- sumOfSquares - Variable in class operations.LevenbergMarquardt
-
The sum of squares.